---
Type: desktop-application
ID: seaview.desktop
Package: seaview
Name:
C: SeaView
Summary:
fr: Édite des aligmements multiples de séquences et les imprime au format PostScript.
C: Edits multiple sequence alignments and prints them in PostScript format.
pt-BR: Edita múltiplos alinhamentos de seqüências e os imprimem em formato PostScript.
en: Edits multiple sequence alignments and prints them in PostScript format.
Description:
C: |-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are
positioned each in their own separate line, such that the nucleotide/amino acid at a particular position
(column) is presumed to have the same biochemical property. SeaView reads and writes various file formats
(NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence
alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood
using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows
one to download sequences from EMBL/GenBank/UniProt using the Internet.</p>
en: |-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are
positioned each in their own separate line, such that the nucleotide/amino acid at a particular position
(column) is presumed to have the same biochemical property. SeaView reads and writes various file formats
(NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence
alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood
using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows
one to download sequences from EMBL/GenBank/UniProt using the Internet.</p>
Categories:
- Biology
- Science
- Education
Keywords:
C:
- genomics
Icon:
cached:
- name: seaview_seaview.jxl
width: 48
height: 48
- name: seaview_seaview.jxl
width: 64
height: 64
- name: seaview_seaview.jxl
width: 128
height: 128
remote:
- url: s/se/seaview.desktop/5bbcaac8d629ab4b62041c1a0d2f4dca/icons/128x128/seaview_seaview.jxl
width: 128
height: 128
stock: seaview
Launchable:
desktop-id:
- seaview.desktop
Provides:
mediatypes:
- text/x-clustalw-alignment
